Package with functions to handle network data and run Infomap, inspired by ecological networks

Coco provides a fast, exact method to solve variations of the Reserve Selection problem including connectivity. It provides a python implementation using the Gurobi ILP solver

Supplement to chapter 21 of the book "Phyllostomid Bats: A Unique Mammalian Radiation"

The R package assembly

Scripts and data associated with the paper: Sahul’s megafauna species were vulnerable to plant-community changes due to their position in the trophic network

Code for trait based simulations of network structure and case study

Analyses of plant-herbivore ecological networks from serpentine and non-serpentine soils. Per-species abundance and H' analyses; empirical networks, subsampled networks, and null models; all figures and analyses

Code and data accompanying the paper "Local and regional processes drive distance decay in structure in a spatial multilayer plant-pollinator network"

R package: Intuitive niche-breadth estimation in multi-trait and phylogenetic dimensions.

Supplement to the paper Queiroz et al. (2020, Biotropica).

Supplementary data from Crestani et al. 2018 (Acta Oecologica)

Data and code of the USFQ Terrestrial Zoology Lab's Pollination Ecology Project.

Agent-based bee colony simulation featuring genetic modeling, foraging algorithms, disease tracking, and comprehensive CLI tools for pollinator population research.

R code for "Predicting predator-prey interactions in terrestrial endotherms using random forest"

Moving beyond species-based conservation planning by simulating the effect of diverse local conservation measures on the global preservation of biotic interaction networks.

Supplementary material to the paper "Dynamics of a plant-pollinator network: Extending the Bianconi-Barabási Model"

Code and data for the paper "Inductive link prediction boosts data availability and enables cross-community link prediction in ecological networks"