RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Pipeline for low-level RNA-Seq data processing

RNAseq STAR pipeplien chr22

Docker to run RSEM for transcript quantification

A pipeline for running rsem analysis on thousands of samples

A python package for working with inputs to and outputs from the toil-rnaseq pipeline

RNA-seq pipeline in R/Bash enables QC, alignment, read counting, and differential expression using Bioconductor; reproducible workflow on Ubuntu with Conda. 🐙

RNASeq and Call Variants

RSEM task for RNA-seq workflow

Standard RNAseq analysis pipeline using snakemake.