Wells Wood Research Group

All

29 repositories

drMD
Public
Molecular Dynamics for Experimentalists
Python
•
MIT License
•5•62•1•0•Updated Aug 27, 2025Aug 27, 2025
drFrankenstein
Public
Fast Parameterisation of Complex Molecules for the AMBER forcefield
Rich Text Format
•0•2•0•0•Updated Aug 27, 2025Aug 27, 2025
drDeltaG
Public
In-place Vina Docking on MD Trajectories
Python
•0•2•0•0•Updated Aug 11, 2025Aug 11, 2025
wells-wood-research.github.io
Public
Group website.
Elm
•0•0•0•7•Updated Aug 8, 2025Aug 8, 2025
timed-design
Public
Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
protein protein-design
Python
•13•59•7•1•Updated Jul 28, 2025Jul 28, 2025
protein-design-archive
Public
Source code for The Protein Design Archive web application.
Elm
•2•10•28•0•Updated Jul 16, 2025Jul 16, 2025
chronowska-stam-wood-2024-protein-design-archive
Public
Code supporting the Protein Design Archive (PDA) database publication
Jupyter Notebook
•
MIT License
•3•16•0•1•Updated Jul 15, 2025Jul 15, 2025
GENPENZ_Hackathon_25
Public
Lets do some computational protein design together!
Python
•0•4•0•0•Updated Jun 20, 2025Jun 20, 2025
isambard
Public
Intelligent System for Analysis, Model Building And Rational Design of biomolecules.
Python
•
MIT License
•6•1•0•0•Updated Jun 12, 2025Jun 12, 2025
BAlaS
Public
Source code for the BUDE Alanine Scan web application.
Elm
•3•12•1•1•Updated May 27, 2025May 27, 2025
aposteriori
Public
DNN based protein design.
Python
•
MIT License
•3•8•5•2•Updated Apr 11, 2025Apr 11, 2025
reindexer
Public
Match atoms indices between two input molecules
Python
•0•0•0•0•Updated Apr 3, 2025Apr 3, 2025
de-stress
Public
DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
bioinformatics pipeline structural-biology protein-structure protein webapp protein-design
C++
•1•26•10•8•Updated Mar 4, 2025Mar 4, 2025
adaptyv-bio-analysis
Public
HTML
•0•2•0•0•Updated Dec 19, 2024Dec 19, 2024
ampal
Public
A simple, intuitive and Pythonic framework for representing biomolecular structure.
Python
•
MIT License
•4•0•0•0•Updated Oct 26, 2024Oct 26, 2024
TTSCP_L102C_DSB-MBnThz-vs-TTSCP_L102C_DDSB-MBnThz
Public
Python
•0•1•0•0•Updated May 2, 2024May 2, 2024
stam-m-large-scale-analysis-2024
Public
Python
•0•0•0•0•Updated Mar 21, 2024Mar 21, 2024
oshea-j-wood-c-pbp-design-2023
Public
Jupyter Notebook
•
MIT License
•1•0•0•0•Updated Jan 18, 2024Jan 18, 2024
ccbuilder2
Public
A web application for atomistic modelling of coiled coils and collagens.
Elm
•
MIT License
•3•0•0•0•Updated Nov 22, 2023Nov 22, 2023
pdb-compare
Public
Jupyter Notebook
•0•0•0•0•Updated Nov 21, 2023Nov 21, 2023
ProteinMPNN_custom_training
Public
Scripts for training ProteinMPNN with a custom dataset and other utils
Shell
•1•1•0•0•Updated Oct 27, 2023Oct 27, 2023
PDBench
Public
PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
deep-learning proteins protein-structure protein-design
Python
•
MIT License
•0•30•4•0•Updated Jan 17, 2023Jan 17, 2023
pv
Public
WebGL protein viewer
JavaScript
•
MIT License
•87•0•0•0•Updated Oct 11, 2021Oct 11, 2021
pollen
Public
Jupyter Notebook
•
MIT License
•1•0•0•0•Updated Aug 24, 2021Aug 24, 2021
alphafold2-multiprocessing
Public
Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
multiprocessing alphafold
Python
•1•23•2•0•Updated Aug 5, 2021Aug 5, 2021
stam-m-wood-c-de-stress-2021
Public
Python
•0•1•0•0•Updated Aug 5, 2021Aug 5, 2021
oshea-j-interface-engineering-2021
Public
DIGITAL Command Language
•
MIT License
•0•3•0•0•Updated Apr 16, 2021Apr 16, 2021
galloway-jg-hairpin-self-assembly-2020
Public
Scripts and data for running particle analysis on AFM data
Jupyter Notebook
•
MIT License
•0•2•0•0•Updated Jul 9, 2020Jul 9, 2020
elm-molecules
Public
An Elm package for working with molecular structure.
Elm
•
MIT License
•0•1•1•0•Updated Jun 29, 2020Jun 29, 2020