A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.

A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.

A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices resulting from next-generation sequencing (NGS) experiments (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including confounding factor analysis and diagnostic visualizations.

🏃‍♀️ An R Package for Actigraphy Data Analysis

Using ML to predict the diagnosis, management, and severity of pediatric appendicitis

Measuring and visualizing biomedical data variability/heterogeneity across data sources

R package for translating between drug identifiers using the Chemical Translation Service (CTS)

Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings

Package to develop and evaluate time series data models based on fluctuation based clustering and Earth Mover's Distances

A Study of the Risk Factors for Leptospirosis Infection in Kenya.

Machine Learning for Biomedical Science

Bioinformatic, statistical & ML analysis of Homologous Recombination Deficiency in triple-negative breast cancer

Multiclass prediction of lower-grade glioma subtypes via gene promoter CpG island profiles